IGVFFI9534FGRQ

released
validated
File Set
IGVFDS8403DDLC(mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:measurement_files_CRUDO_TAPseq-Auxin6hrs-Rep2_S1_R2
md5sum
437cc3d7f4132cd12c4333d78036a7f2
Content MD5sum
c82fac1f2d47b93d7668044b36d0f3d5
File Size
915 MB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/221224_Cohesin_TAPseq_v2/221219_P044_cohesin_tapseq_v2/outs/fastq_path/L380_S3_L001_R2_001.fastq.gz

Sequencing Details

Sequencing Platform
Sequencing Run
1
Lane
1
Illumina Read Type
R2
Average Read Length
90
Read Count
16711547

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI2837YQLJ, IGVFFI8111MPTE, IGVFFI9534FGRQ
Jesse Engreitz, Stanford
1.0 KB
validated

Attribution