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IGVFFI9528JABE

released
validated
File Set
IGVFDS4911ZDCJ(single-cell ATAC-seq (SHARE-seq))
Summary
R2 reads from sequencing run 42
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2002_R2
bradley-bernstein:SS-LS_42_R2
buenrostro-bernstein:SS-LS_2002_R2
buenrostro-bernstein:SS-LS_42_R2
md5sum
48f32136c66f96e09cee9834a19d0ee9
Content MD5sum
c0ec4588a421b29f1ba4e6605024f236
File Size
210 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-155_L1_SS-PKR-129_SS-V1-LEFT-HALF_R2.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
42
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
149
Read Count
4287839

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 129)

Files Derived From This File

2 items
bed
fragments
GRCm39 unfiltered fragments
Jason Buenrostro, Broad
431 MB
validated
bam
alignments
GRCm39 unfiltered alignments
Jason Buenrostro, Broad
3.1 GB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI6393JXIX, IGVFFI9528JABE
Jason Buenrostro, Broad
1.2 KB
validated