IGVFFI9525PCWK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3973YHYP(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X052_G8_P071_L007_R3

md5sum

131895c72096d03bb60b24198a700063

Content MD5sum

e5e63048038bdb32f75188f7a3cf8d01

File Size

14 GB

Submitted File Name

Multiome_ATAC_X052_G8_L008_P071_S44_L007_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

210806609

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1700PLIE

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 70 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease; ... and 8 more samples