Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Data Model
About
Help
Sign In
INDEXED
Home
/
SequenceFile
/
IGVFFI9479QEWX
IGVFFI9479QEWX
released
validated
Json view
File Set
IGVFDS7928ECWE
(reporter library targeting random selections genome-wide)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
tim-reddy:starr-seq-dna-fastq-k562-P006-R1
md5sum
ad4eb1589fa35e344d55847d3f9ae8db
Content MD5sum
b104e335a1742b4a9a0fea7185d84c6d
File Size
6.1 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/raw_data/AIM_1_STARR_seq/K562.starrseq.dna.pool6.R1.fastq.gz
Checkfiles Version
v14
Attribution
Tim Reddy, Duke
(
HG012053
—
Charles Gersbach
)
Sequencing Details
Sequencing Platform
Illumina NextSeq 2000
Sequencing Run
1
Flowcell ID
AACNYKFM5
Lane
1
Sequencing Kit
NextSeq 2000 P3 XLEAP-SBS Reagent Kit
Illumina Read Type
R1
Average Read Length
301
Read Count
42663100
Files Derived From This File
2 items
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI5583ZTQT
bam
alignments
GRCh38 unfiltered alignments
Tim Reddy, Duke
6.4 GB
validated
IGVFFI7460TNNU
bam
alignments
custom assembly unfiltered alignments
Tim Reddy, Duke
6.7 GB
validated