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SequenceFile
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IGVFFI9441CPSA
IGVFFI9441CPSA
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validated
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS6522KVIV
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X009_G5_P008_L004_R1
md5sum
015ffd2c8f19d7ec9d8e767d6d2c05a4
Content MD5sum
bb53c5a9d4625fa42091021da0b5f82a
File Size
4.2 GB
Submitted File Name
Multiome_RNA_X009_G5_L005_P008_S39_L004_R1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
H5THNDSX5
Lane
4
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
30
Read Count
201079813
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM9278BALJ
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 83 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 10 more samples