IGVFFI9430GEZD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8701PRHG(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X011_G3_P009_L001_I1

md5sum

b09ec77949ed693d71cf7dadd5569e58

Content MD5sum

25551021bbd773ab34b948f7b8f22928

File Size

1.7 GB

Submitted File Name

Multiome_ATAC_X011_G3_L003_P009_S5_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HJ7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

222332898

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4167YYTO

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 81 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples