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IGVFFI9424HRUH

released
validated
File Set
IGVFDS6361NSJR(single-cell RNA sequencing assay (SHARE-seq))
Summary
R1 reads from sequencing run 62
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_1982_R1
bradley-bernstein:SS-LS_62_R1
buenrostro-bernstein:SS-LS_1982_R1
buenrostro-bernstein:SS-LS_62_R1
md5sum
c7e0e47077e0bbd87365eb4378129910
Content MD5sum
a36bf8e55e8d8afd49a4c3fd9d829509
File Size
453 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-135_L1_SS-PKR-130_SS-V1-RIGHT-HALF_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
62
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
17164356

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 130)

Files Derived From This File

2 items
tar
comprehensive gene count matrix
unfiltered cell by gene in comprehensive gene count matrix
Jason Buenrostro, Broad
2.6 GB
validated
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
467 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI9424HRUH, IGVFFI7516RQYI
Jason Buenrostro, Broad
1.2 KB
validated