IGVFFI9417TRDK

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI9417TRDK/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI9417TRDK",
10    "assay_titles": [
11        "lentiMPRA"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG011966/",
16        "component": "functional characterization"
17    },
18    "content_md5sum": "1884c51fd8defe03fca34e30273ac09f",
19    "content_type": "reads",
20    "controlled_access": false,
21    "creation_timestamp": "2024-03-21T12:26:00.730902+00:00",
22    "description": "Forward reads HepG2 DNA count data of replicate 1",
23    "externally_hosted": false,
24    "file_format": "fastq",
25    "file_set": {
26        "@id": "/auxiliary-sets/IGVFDS1640HKDD/",
27        "@type": [
28            "AuxiliarySet",
29            "FileSet",
30            "Item"
31        ],
32        "accession": "IGVFDS1640HKDD",
33        "file_set_type": "quantification DNA barcode sequencing",
34        "status": "released",
35        "summary": "quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide"
36    },
37    "file_size": 815269291,
38    "gene_list_for": [],
39    "href": "/sequence-files/IGVFFI9417TRDK/@@download/IGVFFI9417TRDK.fastq.gz",
40    "illumina_read_type": "R1",
41    "input_file_for": [
42        "/tabular-files/IGVFFI6630MFYW/",
43        "/tabular-files/IGVFFI5781OGFX/",
44        "/tabular-files/IGVFFI1492BOLP/",
45        "/tabular-files/IGVFFI8088ZTLN/",
46        "/tabular-files/IGVFFI6610QZXO/",
47        "/tabular-files/IGVFFI4370VABN/"
48    ],
49    "integrated_in": [],
50    "lab": {
51        "@id": "/labs/nadav-ahituv/",
52        "title": "Nadav Ahituv, UCSF"
53    },
54    "loci_list_for": [],
55    "maximum_read_length": 15,
56    "md5sum": "f3173a35d8a6339cfef060dd0edd387c",
57    "mean_read_length": 15,
58    "minimum_read_length": 15,
59    "quality_metrics": [],
60    "read_count": 48197448,
61    "read_names": [
62        "Barcode forward"
63    ],
64    "release_timestamp": "2025-01-30T17:47:26.347032+00:00",
65    "s3_uri": "s3://igvf-files/2024/03/21/1f3fabab-05cd-4c8f-a0b5-4386644e36e0/IGVFFI9417TRDK.fastq.gz",
66    "schema_version": "15",
67    "seqspecs": [
68        "/configuration-files/IGVFFI2259UIHW/"
69    ],
70    "sequencing_kit": "NextSeq 500 High Output v2 Kit",
71    "sequencing_platform": {
72        "@id": "/platform-terms/EFO_0009173/",
73        "status": "released",
74        "term_name": "Illumina NextSeq 500"
75    },
76    "sequencing_run": 3,
77    "status": "released",
78    "submitted_by": {
79        "@id": "/users/696ac72c-9846-469d-8bf1-8bd01856d4ba/",
80        "title": "Thorben Maass"
81    },
82    "submitted_file_name": "\"/data/cephfs-2/unmirrored/groups/ag-kircher/IGVF_data_submssion_TM/proximalPromotor/run3/dna_1_S1_R1_001.fastq.gz\"",
83    "submitter_comment": "seqrun3",
84    "summary": "R1 reads from sequencing run 3",
85    "upload_status": "validated",
86    "uuid": "1f3fabab-05cd-4c8f-a0b5-4386644e36e0"
87}