IGVFFI9401AASG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9037WATJ(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X039_G2_P039_L003_R2

md5sum

6e50b3b294c8b709c3fda4695f87f263

Content MD5sum

00b115d1fb80791283ab0a0d950c839d

File Size

4.0 GB

Submitted File Name

Multiome_ATAC_X039_G2_L002_P039_S24_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

229985670

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9156NSGE

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 82 years) substantia nigra tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 84 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples