{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI9391DBVT/",
"@type": [
"SequenceFile",
"File",
"Item"
],
"accession": "IGVFFI9391DBVT",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep3-BinF-PCRrep1_R2"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released sequence file [IGVFFI9391DBVT](/sequence-files/IGVFFI9391DBVT/) has in progress subobject auxiliary set [IGVFDS9586MJQR](/auxiliary-sets/IGVFDS9586MJQR/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/sequence-files/IGVFFI9391DBVT/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
"content_md5sum": "a17517e2bfaa5181a4a3785310efdca9",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T18:44:17.077294+00:00",
"file_format": "fastq",
"file_set": "/auxiliary-sets/IGVFDS9586MJQR/",
"file_size": 14746373,
"gene_list_for": [],
"href": "/sequence-files/IGVFFI9391DBVT/@@download/IGVFFI9391DBVT.fastq.gz",
"illumina_read_type": "R2",
"index": "CCAACATT:ACTG",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"loci_list_for": [],
"maximum_read_length": 150,
"md5sum": "00845bc8f9acd468e026a33ecf1bb01a",
"mean_read_length": 150,
"minimum_read_length": 150,
"read_count": 335859,
"release_timestamp": "2023-12-20T23:33:26.700491+00:00",
"s3_uri": "s3://igvf-files/2023/12/05/acb6cf4c-81af-4670-a8da-0f42aaa6fc87/IGVFFI9391DBVT.fastq.gz",
"schema_version": "14",
"seqspecs": [],
"sequencing_platform": "/platform-terms/EFO_0008566/",
"sequencing_run": 2,
"status": "released",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_file_name": "220426pPPIF_REPEAT-THP1-Gen8b-pPPIF-Amp_pPPIF-BioRep1-FFRep3-BinF-PCRrep1_S20_R2_001.fastq.gz",
"summary": "R2 reads from sequencing run 2",
"upload_status": "validated",
"uuid": "acb6cf4c-81af-4670-a8da-0f42aaa6fc87"
}