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IGVFFI9377FZXN

released
validated
File Set
IGVFDS3744SQTD(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp1_rna_10x1_NGS2_r2
md5sum
d78077386a59d82b8aa24bb7e90229e8
Content MD5sum
463892b2fee0d623e341ef93eae228c1
File Size
12 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF1_McGinnis/GEX/FASTQ/GEX_1_S41_L008_R2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
2257H3LT3
Lane
8
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R2
Average Read Length
90
Read Count
289245765

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: HAP-1 cell line, male, Homo sapiens; HAP-1 cell line, male, Homo sapiens; ... and 13 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
147 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI9377FZXN, IGVFFI5543IUWE, IGVFFI6372LYLJ, IGVFFI5685DFEN
Ansuman Satpathy, Stanford
1.4 KB
validated

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford