IGVFFI9351WGSW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0019TTJE(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X021_G7_P021_L001_I1

md5sum

928bef3d7f89d1bea71c55905f750be5

Content MD5sum

7892af80a1a217a46e5f1e79c50a8a48

File Size

2.1 GB

Submitted File Name

Multiome_ATAC_X021_G7_L007_P021_S5_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

291494336

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7122DQGR

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 90 or above years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples