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IGVFFI9320EENZ

released
validated
File Set
IGVFDS7409OQIL(mixed CRISPR FlowFISH screen sorted on the expression of MYC integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin0hrs-FF1-BinD-PCR2_Rep1_S10
md5sum
d40265f9c565e65e917b1fe53336aaa7
Content MD5sum
0089a71a4432792acc3fc1baa4dd7671
File Size
29 MB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin0hrs-FF1-BinD-PCR2-Rep1_S10_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jesse Engreitz, Stanford

Sequencing Details

Sequencing Platform
Illumina HiSeq 2500
Sequencing Run
1
Index
GGTCCAGA:TGCG
Average Read Length
21
Read Count
1487693

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) HCT116 cell line (sorting details: FACS bin D for 55-65% expression of MYC) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI9320EENZ
Jesse Engreitz, Stanford
912 B
validation exempted