IGVFFI9317BFPY

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI9317BFPY/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI9317BFPY",
    "aliases": [
        "bradley-bernstein:SS-LS_2548_R2",
        "buenrostro-bernstein:SS-LS_2548_R2"
    ],
    "assay_titles": [
        "SHARE-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011986/",
        "component": "mapping"
    },
    "content_md5sum": "d21ce8c9b225b6735c4c108369090a9e",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2024-02-12T21:52:00.977832+00:00",
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS1828CQSR/",
        "accession": "IGVFDS1828CQSR",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/primary-cells/IGVFSM9496THJI/",
                "accession": "IGVFSM9496THJI",
                "classifications": [
                    "primary cell"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/UBERON_0002371/",
                        "status": "released",
                        "term_name": "bone marrow"
                    }
                ],
                "status": "released",
                "summary": "bone marrow cell (cellular sub pool: SS-PKR 2), male, Homo sapiens (37 years)",
                "taxa": "Homo sapiens"
            }
        ],
        "status": "released",
        "summary": "single-cell RNA sequencing assay (SHARE-seq)"
    },
    "file_size": 1655246306,
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI9317BFPY/@@download/IGVFFI9317BFPY.fastq.gz",
    "illumina_read_type": "R2",
    "input_file_for": [
        "/matrix-files/IGVFFI3038HSVX/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/jason-buenrostro/",
        "title": "Jason Buenrostro, Broad"
    },
    "loci_list_for": [],
    "maximum_read_length": 149,
    "md5sum": "23cd1962968c4829ee0b23610354e13d",
    "mean_read_length": 149,
    "minimum_read_length": 149,
    "read_count": 38749500,
    "release_timestamp": "2025-01-14T19:19:41.287021+00:00",
    "s3_uri": "s3://igvf-files/2024/02/12/fa49b88c-fa82-4a18-b130-1497368f18d0/IGVFFI9317BFPY.fastq.gz",
    "schema_version": "14",
    "seqspecs": [],
    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0008637/",
        "status": "released",
        "term_name": "Illumina NovaSeq 6000"
    },
    "sequencing_run": 2548,
    "status": "released",
    "submitted_by": {
        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
        "title": "Siddarth Wekhande"
    },
    "submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-24_L4_SS-PKR-2_SS-V2-PLATE2-3rd-THIRD_R2.fastq.gz",
    "submitter_comment": "This fastq has already been prefiltered with IGVFDS9814BQOF barcode onlist.",
    "summary": "R2 reads from sequencing run 2548",
    "upload_status": "validated",
    "uuid": "fa49b88c-fa82-4a18-b130-1497368f18d0"
}