IGVFFI9313TBBT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3032MJTN(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X017_G8_P018_L002_I1

md5sum

3f2f4fe23bfdc8d52a3914b0672ea656

Content MD5sum

893bd2c5628e441c1497ff2c02034542

File Size

1.4 GB

Submitted File Name

Multiome_RNA_X017_G8_L008_P018_S16_L002_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7NNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

249389194

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5591WTFR

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples