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IGVFFI9300DFWT

released
validated
File Set
IGVFDS8078FJZR(single-cell RNA sequencing assay (SHARE-seq))
Summary
R2 reads from sequencing run 248
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2008_R2
bradley-bernstein:SS-LS_248_R2
buenrostro-bernstein:SS-LS_2008_R2
buenrostro-bernstein:SS-LS_248_R2
md5sum
68c9a41837e6b61c89744d06d1563b9c
Content MD5sum
c27ff5708e39c3326df05f61a45d8518
File Size
632 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-133_L2_SS-PKR-129_SS-V1-LEFT-HALF_R2.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
248
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
149
Read Count
13410922

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 129)

Files Derived From This File

2 items
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
367 MB
validated
tar
comprehensive gene count matrix
unfiltered cell by gene in comprehensive gene count matrix
Jason Buenrostro, Broad
2.2 GB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI8093PSPU, IGVFFI9300DFWT
Jason Buenrostro, Broad
1.2 KB
validated