IGVFFI9298RECV

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI9298RECV/",
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9    "accession": "IGVFFI9298RECV",
10    "aliases": [
11        "buenrostro-bernstein:SS-LS_7385_R2"
12    ],
13    "assay_titles": [
14        "SHARE-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011986/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v17",
22    "content_md5sum": "586bd0d7f433ce772cf02bf4a40876a8",
23    "content_type": "reads",
24    "controlled_access": false,
25    "creation_timestamp": "2025-03-05T15:51:38.442644+00:00",
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27    "file_format": "fastq",
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35        "accession": "IGVFDS9519NBWN",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0002764/",
38            "term_name": "single-cell ATAC-seq"
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43                "@id": "/tissues/IGVFSM6189KRRN/",
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51                "classifications": [
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54                "sample_terms": [
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56                        "@id": "/sample-terms/NTR_0000646/",
57                        "status": "released",
58                        "term_name": "left cerebral cortex"
59                    }
60                ],
61                "status": "released",
62                "summary": "Mus musculus C57BL/6J (female) left cerebral cortex tissue (cellular sub pool: SS-PKR 500)",
63                "taxa": "Mus musculus"
64            }
65        ],
66        "status": "released",
67        "summary": "single-cell ATAC-seq (SHARE-seq)"
68    },
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76        "/alignment-files/IGVFFI3793CBCL/"
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79    "lab": {
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81        "title": "Jason Buenrostro, Broad"
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85    "md5sum": "8ffa8baf026c19eb1a1070d953a82e39",
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88    "quality_metrics": [],
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90    "read_names": [
91        "Read 2",
92        "Barcode index"
93    ],
94    "release_timestamp": "2025-03-28T21:21:57.356340+00:00",
95    "s3_uri": "s3://igvf-files/2025/03/05/fe3ee72a-3423-470a-803a-ba499476898a/IGVFFI9298RECV.fastq.gz",
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100    "sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
101    "sequencing_platform": {
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103        "status": "released",
104        "term_name": "Illumina NovaSeq X"
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106    "sequencing_run": 7385,
107    "status": "released",
108    "submitted_by": {
109        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
110        "title": "Siddarth Wekhande"
111    },
112    "submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-1949_L1_SS-PKR-500_SS-V1-RIGHT-HALF_R2.fastq.gz",
113    "summary": "R2 reads from sequencing run 7385",
114    "upload_status": "validated",
115    "uuid": "fe3ee72a-3423-470a-803a-ba499476898a"
116}