IGVFFI9293GRVC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3593RLPT(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X025_G1_P023_L003_R1

md5sum

4ed0c72ec689d23c6d56e7c44e575d8d

Content MD5sum

70daa2c5ec18637019f508d5c816afd2

File Size

7.4 GB

Submitted File Name

Multiome_ATAC_X025_G1_L001_P023_S33_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

229170004

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6254TPHT

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 87 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples