IGVFFI9291YSSU

released
validated
File Set
IGVFDS6369SLCB(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp2_atac_10x1_NGS2_r1
md5sum
273e3da7cc3f3ec205ba9e78a018c3f7
Content MD5sum
af3eb379acaee758a2d6359445e7d30c
File Size
16 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF2_McGinnis/ATAC/FASTQ/ATAC_3_S360_L008_R1_001.fastq.gz
Checkfiles Version
Attribution

Sequencing Details

Sequencing Platform
Sequencing Run
1
Flowcell ID
2257H3LT3
Lane
8
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
50
Read Count
552165744

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) TeloHAEC cell line treated with 10 ng/mL tumor necrosis factor alpha for 4 hours; Homo sapiens (female) TeloHAEC cell line; ... and 7 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Ansuman Satpathy, Stanford
6.9 GB
validation exempted

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI0491OLML, IGVFFI9291YSSU, IGVFFI2547LRAU, IGVFFI3640SGYN
Ansuman Satpathy, Stanford
1.4 KB
validated