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INDEXED
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SequenceFile
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IGVFFI9285AMZS
IGVFFI9285AMZS
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS9065NCPK
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X052_G4_P070_L004_I2
md5sum
97e5a4ccd32f584c2373f51eb7bc8504
Content MD5sum
ed5e0ececf5a32476fded19307826611
File Size
144 MB
Submitted File Name
Multiome_RNA_X052_G4_L004_P070_S40_L004_I2_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
19RTCA4LE
Lane
4
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I2
Average Read Length
10
Read Count
16561397
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM2782GJUE
MultiplexedSample
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 70 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease; ... and 8 more samples