IGVFFI9279XSCY

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI9279XSCY/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI9279XSCY",
10    "aliases": [
11        "buenrostro-bernstein:SS-LS_8347_R1"
12    ],
13    "assay_titles": [
14        "SHARE-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011986/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v17",
22    "content_md5sum": "48fdb9073f591d1f54ac29123a3ff802",
23    "content_type": "reads",
24    "controlled_access": false,
25    "creation_timestamp": "2025-03-05T17:57:54.401762+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS1861QPYY/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS1861QPYY",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0002764/",
38            "term_name": "single-cell ATAC-seq"
39        },
40        "file_set_type": "experimental data",
41        "samples": [
42            {
43                "@id": "/tissues/IGVFSM5470EUSZ/",
44                "@type": [
45                    "Tissue",
46                    "Biosample",
47                    "Sample",
48                    "Item"
49                ],
50                "accession": "IGVFSM5470EUSZ",
51                "classifications": [
52                    "tissue"
53                ],
54                "sample_terms": [
55                    {
56                        "@id": "/sample-terms/NTR_0000646/",
57                        "status": "released",
58                        "term_name": "left cerebral cortex"
59                    }
60                ],
61                "status": "released",
62                "summary": "Mus musculus C57BL/6J (male) left cerebral cortex tissue (cellular sub pool: SS-PKR 576)",
63                "taxa": "Mus musculus"
64            }
65        ],
66        "status": "released",
67        "summary": "single-cell ATAC-seq (SHARE-seq)"
68    },
69    "file_size": 3245964594,
70    "flowcell_id": "22V3MJLT3",
71    "gene_list_for": [],
72    "href": "/sequence-files/IGVFFI9279XSCY/@@download/IGVFFI9279XSCY.fastq.gz",
73    "illumina_read_type": "R1",
74    "input_file_for": [
75        "/alignment-files/IGVFFI2276XCWY/",
76        "/tabular-files/IGVFFI3752MAME/"
77    ],
78    "integrated_in": [],
79    "lab": {
80        "@id": "/labs/jason-buenrostro/",
81        "title": "Jason Buenrostro, Broad"
82    },
83    "loci_list_for": [],
84    "maximum_read_length": 100,
85    "md5sum": "230e7f5269517ef5c2dd80b26c8e992e",
86    "mean_read_length": 100,
87    "minimum_read_length": 100,
88    "quality_metrics": [],
89    "read_count": 82871833,
90    "read_names": [
91        "Read 1"
92    ],
93    "release_timestamp": "2025-03-28T21:21:30.563285+00:00",
94    "s3_uri": "s3://igvf-files/2025/03/05/fd417eab-9ecb-4a19-8b59-74a1b96d62d5/IGVFFI9279XSCY.fastq.gz",
95    "schema_version": "15",
96    "seqspecs": [
97        "/configuration-files/IGVFFI7998CUEA/"
98    ],
99    "sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
100    "sequencing_platform": {
101        "@id": "/platform-terms/EFO_0022840/",
102        "status": "released",
103        "term_name": "Illumina NovaSeq X"
104    },
105    "sequencing_run": 8347,
106    "status": "released",
107    "submitted_by": {
108        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
109        "title": "Siddarth Wekhande"
110    },
111    "submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-2233_L8_SS-PKR-576_SS-V1-LEFT-HALF_R1.fastq.gz",
112    "summary": "R1 reads from sequencing run 8347",
113    "upload_status": "validated",
114    "uuid": "fd417eab-9ecb-4a19-8b59-74a1b96d62d5"
115}