IGVFFI9278ZHKN

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS5643OMJV(cell hashing barcode sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
R2 reads from sequencing run 2
File Format
fastq
Content Type
reads
Aliases
gary-hon:LW274C_1_R2
md5sum
fe93cad23ce08dc305d962781ca436e0
Content MD5sum
0c4c83e5449b980771fae2dabfe20334
File Size
405 MB
Submitted File Name
/project/GCRB/Hon_lab/shared/data/sequencing_data/2023/2023-12-22-McDermott-NextSeq.10X/2023-12-22/outs/fastq_path/AAF5CKNM5//LW274C_S12_L001_R2_001.fastq.gz
Checkfiles Version

Sequencing Details

Sequencing Platform
Sequencing Run
2
Flowcell ID
AAF5CKNM5
Lane
1
Illumina Read Type
R2
Average Read Length
90
Read Count
9868195

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW274), female, Homo sapiens modified with CRISPRi Sp-dCas9, transfected with a guide library

Files Derived From This File

2 items
hdf5
filtered feature barcode matrix
cell by UMI count in filtered feature barcode matrix
Gary Hon, UT
425 MB
validated
pkl
raw feature barcode matrix
cell by CRISPR guide capture in raw feature barcode matrix
Gary Hon, UT
789 MB
validated

Attribution