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IGVFFI9275BZMG
IGVFFI9275BZMG
released
validated
Json view
File Set
IGVFDS8403DDLC
(mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:measurement_files_CRUDO_TAPseq-Auxin6hrs-Rep2_S3_R1
md5sum
956617dc26471901b5c9c0a1d68e1112
Content MD5sum
ce7d861dc12b95ff335661e30bab7915
File Size
412 MB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/221224_Cohesin_TAPseq_v2/221219_P044_cohesin_tapseq_v2/outs/fastq_path/L380_S3_L003_R1_001.fastq.gz
Sequencing Details
Sequencing Platform
Illumina NextSeq 550
Sequencing Run
1
Lane
3
Illumina Read Type
R1
Average Read Length
28
Read Count
17490268
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM8511JOMW
InVitroSystem
HCT116
HCT116 cell line, male, Homo sapiens treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI7942WNXM
yaml
seqspec
seqspec of IGVFFI9275BZMG, IGVFFI3272DDWD, IGVFFI5460ASSY
Jesse Engreitz, Stanford
1.0 KB
validated
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford