IGVFFI9268KKIZ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3348OOKN(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X052_G2_P069_L003_R3

md5sum

2349bbe0dcf1e06676be7dcf31c9d012

Content MD5sum

8114a17e3f399d8265a8cbe30824141d

File Size

13 GB

Submitted File Name

Multiome_ATAC_X052_G2_L002_P069_S18_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

185806571

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0643NOLO

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 70 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease; ... and 8 more samples