IGVFFI9265DRNP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7060UGUF(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP028_G4_P075_L005_R1

md5sum

4a2a0da5c66ad43298511bcefc8468ee

Content MD5sum

3a6909aee388b398c34d155d1d9f997e

File Size

10 GB

Submitted File Name

Multiome_ATAC_RP028_G4_L004_P075_S36_L005_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

142351795

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4592JTZF

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; ... and 6 more samples