IGVFFI9250JGBC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4396WXHV(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X017_G8_P017_L001_R1

md5sum

4df751aa8ec2fcf50b4ff859474b1851

Content MD5sum

4e394742daee72a50154cb2b38459086

File Size

9.8 GB

Submitted File Name

Multiome_ATAC_X017_G8_L008_P017_S2_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7NNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

321179584

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5591WTFR

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples