IGVFFI9235TJUS

preview
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI9235TJUS/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI9235TJUS",
10    "aliases": [
11        "jimmie-ye:XX7-SC1_snRNA_S1_R1"
12    ],
13    "assay_titles": [
14        "10x multiome"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v17",
22    "content_md5sum": "65c0c072af581ce3c97425389579bc87",
23    "content_type": "reads",
24    "controlled_access": true,
25    "creation_timestamp": "2025-03-11T14:51:02.214575+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS6879UVGJ/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS6879UVGJ",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0003109/",
38            "term_name": "single-nucleus RNA sequencing assay"
39        },
40        "controlled_access": true,
41        "data_use_limitation_summaries": [
42            "GRU"
43        ],
44        "file_set_type": "experimental data",
45        "samples": [
46            {
47                "@id": "/multiplexed-samples/IGVFSM5918RYYX/",
48                "@type": [
49                    "MultiplexedSample",
50                    "Sample",
51                    "Item"
52                ],
53                "accession": "IGVFSM5918RYYX",
54                "classifications": [
55                    "primary cell",
56                    "multiplexed sample"
57                ],
58                "disease_terms": [],
59                "modifications": [],
60                "sample_terms": [
61                    {
62                        "@id": "/sample-terms/CL_2000001/",
63                        "status": "released",
64                        "term_name": "peripheral blood mononuclear cell"
65                    }
66                ],
67                "status": "preview",
68                "summary": "multiplexed sample: Homo sapiens (male, 35.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell; ... and 17 more samples",
69                "taxa": "Homo sapiens",
70                "treatments": []
71            }
72        ],
73        "status": "preview",
74        "summary": "single-nucleus RNA sequencing assay (10x multiome)"
75    },
76    "file_size": 8030942159,
77    "gene_list_for": [],
78    "href": "/sequence-files/IGVFFI9235TJUS/@@download/IGVFFI9235TJUS.fastq.gz",
79    "illumina_read_type": "R1",
80    "input_file_for": [],
81    "integrated_in": [],
82    "lab": {
83        "@id": "/labs/jimmie-ye/",
84        "title": "Jimmie Ye, UCSF"
85    },
86    "loci_list_for": [],
87    "maximum_read_length": 50,
88    "md5sum": "aca5801f858d62886a77651c471a6879",
89    "mean_read_length": 50,
90    "minimum_read_length": 50,
91    "quality_metrics": [],
92    "read_count": 240242566,
93    "read_names": [
94        "Read 1"
95    ],
96    "s3_uri": "s3://igvf-restricted-files/2025/03/11/8feed5b2-44d0-4125-b8df-dab13f5dc7fc/IGVFFI9235TJUS.fastq.gz",
97    "schema_version": "15",
98    "seqspecs": [
99        "/configuration-files/IGVFFI7013YZQH/"
100    ],
101    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
102    "sequencing_platform": {
103        "@id": "/platform-terms/EFO_0008637/",
104        "status": "released",
105        "term_name": "Illumina NovaSeq 6000"
106    },
107    "sequencing_run": 510,
108    "status": "preview",
109    "submitted_by": {
110        "@id": "/users/6df823a5-62f2-4562-94ba-e9285afcfcf4/",
111        "title": "Marcus Alvarez"
112    },
113    "submitted_file_name": "production_data/xhlt1/data/single_cell_GEX/raw/XHLT1-POOL-XX7-SC1/AH2YMLDSX3_ICJY03/XHLT1-POOL-XX7-SC1-GEX_S9_L002_R1_001.fastq.gz",
114    "summary": "R1 reads from sequencing run 510",
115    "upload_status": "validated",
116    "uuid": "8feed5b2-44d0-4125-b8df-dab13f5dc7fc"
117}