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IGVFFI9218BUCK

released
validated
File Set
IGVFDS0020LQRY(single-cell ATAC-seq (SHARE-seq))
Summary
R1 reads from sequencing run 241
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2031_R1
bradley-bernstein:SS-LS_241_R1
buenrostro-bernstein:SS-LS_2031_R1
buenrostro-bernstein:SS-LS_241_R1
md5sum
a129735879eb0cfa215ff71fc4ae705d
Content MD5sum
309a13940770b884ea805969afb6ebda
File Size
639 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-156_L2_SS-PKR-129_2022-APRIL-R1-PLATE2-ENTIRE-PLATE_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
241
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
23198218

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 129)

Files Derived From This File

2 items
bed
fragments
GRCm39 unfiltered fragments
Jason Buenrostro, Broad
431 MB
validated
bam
alignments
GRCm39 unfiltered alignments
Jason Buenrostro, Broad
3.1 GB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI9218BUCK, IGVFFI1801NWGU
Jason Buenrostro, Broad
1.2 KB
validated