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INDEXED
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SequenceFile
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IGVFFI9211DRJW
IGVFFI9211DRJW
preview
validated
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS6899OQTS
(single-nucleus ATAC-seq (10x multiome))
Summary
R3 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_ATAC_X032_G2_P031_L003_R3
md5sum
230405d6ed27a331e8d7362de24779df
Content MD5sum
100f9d6c0d5116921b633ddd2abe5cae
File Size
14 GB
Submitted File Name
Multiome_ATAC_X032_G2_L002_P031_S38_L003_R3_001.fastq.gz
Checkfiles Version
v20
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
HV7VHDSX5
Lane
3
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R3
Average Read Length
100
Read Count
265005945
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM8298WTCX
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 70 years) substantia nigra tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF