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IGVFFI9202GNDI

released
validated
File Set
IGVFDS1850HDEG(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp17_atac_10x3_NGS4_i1
md5sum
e9a67cb90b017902b38bf6bc07086c42
Content MD5sum
1513b7acd75e1837dbb8273c745a1e18
File Size
1.4 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/igvf17/ATAC/CMAS19_ATAC3_S46_L008_I1_001.fastq.gz
Checkfiles Version
v14
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
22NF33LT3
Lane
8
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
8
Read Count
195961360

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 2 days; Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 1 day; ... and 10 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Ansuman Satpathy, Stanford
5.1 GB
validation exempted

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI9643WXMN, IGVFFI6887BEUB, IGVFFI4912TWRK, IGVFFI9202GNDI
Ansuman Satpathy, Stanford
1.4 KB
validated