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IGVFFI9175EUYL

released
validated
File Set
IGVFDS4302OZMS(lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
md5sum
fae9c3799baf364b7318cd09640d7269
Content MD5sum
6d46bac33f0eee30d45aa91048e29d93
File Size
344 MB
Submitted File Name
"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/ASD_nadav/counts/TSTFI36022383DNA_rep2_R1.fastq.gz"
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NextSeq 500
Sequencing Run
1
Sequencing Kit
NextSeq 500 Mid Output v2 Kit
Illumina Read Type
R1
Average Read Length
15
Read Count
15744296

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
neural progenitor pooled cell specimen, Homo sapiens transduced (lentivirus) with a reporter library

Files Derived From This File

3 items
tsv
reporter experiment
reporter experiment
Nadav Ahituv, UCSF
553 KB
validated
tsv
reporter genomic variant effects
reporter genomic variant effects
Nadav Ahituv, UCSF
121 KB
validated
tsv
reporter experiment
reporter experiment
Nadav Ahituv, UCSF
543 KB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI9175EUYL, IGVFFI7520JNOX, IGVFFI8506ZTML
Nadav Ahituv, UCSF
1.3 KB
validation exempted

Attribution

Award
HG011966
Principal Investigator(s)
Contact P.I.
Jay Shendure
Lab
Nadav Ahituv, UCSF