IGVFFI9157QKKU

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9821UHEX(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X028_G1_P027_L003_I1

md5sum

655c9de1e08715f6666ccf3afc068ab0

Content MD5sum

644deaa3cb1e741117d4c9290c3a56ca

File Size

1.5 GB

Submitted File Name

Multiome_ATAC_X028_G1_L001_P027_S18_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

210331214

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6259JSXN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples