IGVFFI9144RTSO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0421QOQA(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X009_G2_P007_L003_R1

md5sum

db9634d062bc3f7d8bc00924e979b841

Content MD5sum

5effc7402f1a06d764efc96094f986f3

File Size

15 GB

Submitted File Name

Multiome_ATAC_X009_G2_L002_P007_S22_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5THNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

288805230

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6928XXNG

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 10 more samples