IGVFFI9133BYDP

released
validated
File Set
IGVFDS3171OFHP(mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:measurement_files_CRUDO_TAPseq-Auxin0hrs-Rep1_S3_R1
md5sum
4459af92c0b0914b9d3038b7ecdf93a4
Content MD5sum
3684eeb5ba20adea0343303ba0dc960d
File Size
1.3 GB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/221125_Cohesin_TAPseq_v1/221125_Cohesin_TAPseq_v1/outs/fastq_path/L360_S1_L003_R1_001.fastq.gz

Sequencing Details

Sequencing Platform
Sequencing Run
1
Lane
3
Illumina Read Type
R1
Average Read Length
28
Read Count
53439235

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI9133BYDP, IGVFFI3790XJRX, IGVFFI5644SHUR
Jesse Engreitz, Stanford
1.0 KB
validated

Attribution