IGVFFI9121LPRU

released
validated
File Set
IGVFDS8728GREK(mixed CRISPR FlowFISH screen sorted on the expression of FAM3C integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:auxiliary_file_CRUDO_FAM3C_Auxin0hrs-FF2-BinC-PCR1-Rep1_S123
md5sum
20b6eaa07d18620049794c2950f4aa21
Content MD5sum
65dec3fc15fdbc5dabdca03eede571fd
File Size
22 MB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/220308B014_CCND1_SSFA2_FAM3C/fastq_trim/FAM3C-Auxin0hrs-FF2-BinC-PCR1-Rep1_S123_R1_001.fastq.gz
Checkfiles Version

Sequencing Details

Sequencing Platform
Sequencing Run
1
Index
GACAGTAA:CCAG
Average Read Length
21
Read Count
992158

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens (sorting details: FACS bin C for 35-45% expression of FAM3C) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI9121LPRU
Jesse Engreitz, Stanford
914 B
validated

Attribution