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INDEXED
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SequenceFile
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IGVFFI9107BXIK
IGVFFI9107BXIK
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS6114MEFE
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X052_G2_P070_L005_I2
md5sum
4cbd852f658282a48c7598724eaf496b
Content MD5sum
443c55d9db259db3c6ef1aaf8c1136f7
File Size
1.5 GB
Submitted File Name
Multiome_RNA_X052_G2_L002_P070_S38_L005_I2_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
19RTCA4LE
Lane
5
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I2
Average Read Length
10
Read Count
209612472
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM0643NOLO
MultiplexedSample
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 70 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease; ... and 8 more samples