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IGVFFI9080GXFN

released
validated
File Set
IGVFDS1089VHTM(CRISPR HiCAR integrating a non-targeting guide (sgRNA) library)
Summary
R1 reads from sequencing run 4
File Format
fastq
Content Type
reads
Aliases
charles-gersbach:measurement-set-crispra-control-mouse-hl1-targeted-hicar-rep1-R1
md5sum
0347a0cff417f6b80a89e1587900b4df
Content MD5sum
eb69c65a185bdb6e9dd2322b9d025ada
File Size
1.2 GB
Submitted File Name
/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/fastq/crispra_mouse/crispra_hicar_mouse_fastq/HL_1_TA432_NT_1_noET1_ds.cf4cef3a109a4e3da737a08d710b3099/HL_1_TA432_NT_1_noET1_S11_L001_R1_001.fastq.gz

Sequencing Details

Sequencing Platform
Illumina NextSeq 2000
Sequencing Run
4
Sequencing Kit
NextSeq 1000/2000 P2 Reagent Kit
Illumina Read Type
R1
Average Read Length
100
Read Count
23743805

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HL-1 cell line, female, Mus musculus C57BL/6J transfected with a guide library

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
mcool
contact matrix
genomic position by genomic position in contact matrix
Charles Gersbach, Duke
53 MB
validated

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke