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IGVFFI9060BQTU

released
validated
File Set
IGVFDS9620KXMW(single-cell RNA sequencing assay (SHARE-seq))
Summary
R2 reads from sequencing run 259
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2068_R2
bradley-bernstein:SS-LS_259_R2
buenrostro-bernstein:SS-LS_2068_R2
buenrostro-bernstein:SS-LS_259_R2
md5sum
d71f3b3f5a988edef95cf6e9f0a2e949
Content MD5sum
c4b30fda575c6b9907cf34dd5bdac8d7
File Size
1.9 GB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-197_L1_SS-PKR-132_SS-V1-RIGHT-HALF_R2.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
259
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
149
Read Count
39382266

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 132)

Files Derived From This File

2 items
tar
comprehensive gene count matrix
unfiltered cell by gene in comprehensive gene count matrix
Jason Buenrostro, Broad
5.2 GB
validated
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
962 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI7687JKNF, IGVFFI9060BQTU
Jason Buenrostro, Broad
1.2 KB
validated