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IGVFFI9057CJDM

released
validated
File Set
IGVFDS4602PSGH(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp3_rna_10x2_NGS2_r1
md5sum
3eb6b3286e5a8e92bc6a104bbb31db0c
Content MD5sum
b77fbeab2b95b978c6b9f26a3ac96392
File Size
5.3 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF3_McGinnis/GEX/FASTQ/GEX_2_S2_L002_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JJCLT3
Lane
2
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
28
Read Count
275133530

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
96 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI9892DBGM, IGVFFI8509TPHN, IGVFFI9057CJDM, IGVFFI3371AGWL
Ansuman Satpathy, Stanford
1.4 KB
validated

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford