IGVFFI9050MLEI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8030HFXX(single-nucleus RNA sequencing assay (10x multiome))

Summary

I2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X026_G1_P026_L002_I2

md5sum

692d3a7e76ff30aef8375b65445a1d1a

Content MD5sum

c565dbcfb876943d1a55bc205d147d02

File Size

1.6 GB

Submitted File Name

Multiome_RNA_X026_G1_L001_P026_S2_L002_I2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

236029144

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7524IPCT

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples