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IGVFFI9043ACMD

released
validated
File Set
IGVFDS8403DDLC(mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:measurement_files_CRUDO_TAPseq-Auxin6hrs-Rep2_S4_I1
md5sum
e361d7bb1ffa9a0843e86cb1caba831d
Content MD5sum
082b6ebd8534f8ae0745a8003cae235d
File Size
124 MB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/221224_Cohesin_TAPseq_v2/221219_P044_cohesin_tapseq_v2/outs/fastq_path/L380_S3_L004_I1_001.fastq.gz

Sequencing Details

Sequencing Platform
Illumina NextSeq 550
Sequencing Run
1
Lane
4
Illumina Read Type
I1
Average Read Length
8
Read Count
17289700

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI3461WBDK, IGVFFI9043ACMD, IGVFFI4839QVTC
Jesse Engreitz, Stanford
1.0 KB
validated

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford