IGVFFI9042OJDL

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI9042OJDL/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI9042OJDL",
10    "assay_titles": [
11        "Parse SPLiT-seq"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG012077/",
16        "component": "mapping"
17    },
18    "content_md5sum": "a84a65d0bffe69cfc0144d439b7d8aab",
19    "content_type": "reads",
20    "controlled_access": false,
21    "creation_timestamp": "2023-10-18T23:43:19.192876+00:00",
22    "externally_hosted": false,
23    "file_format": "fastq",
24    "file_set": {
25        "@id": "/measurement-sets/IGVFDS6102WMDF/",
26        "@type": [
27            "MeasurementSet",
28            "FileSet",
29            "Item"
30        ],
31        "accession": "IGVFDS6102WMDF",
32        "assay_term": {
33            "@id": "/assay-terms/OBI_0003109/",
34            "term_name": "single-nucleus RNA sequencing assay"
35        },
36        "file_set_type": "experimental data",
37        "samples": [
38            {
39                "@id": "/multiplexed-samples/IGVFSM8579RFZL/",
40                "@type": [
41                    "MultiplexedSample",
42                    "Sample",
43                    "Item"
44                ],
45                "accession": "IGVFSM8579RFZL",
46                "classifications": [
47                    "tissue",
48                    "multiplexed sample"
49                ],
50                "disease_terms": [],
51                "modifications": [],
52                "sample_terms": [
53                    {
54                        "@id": "/sample-terms/NTR_0000646/",
55                        "status": "released",
56                        "term_name": "left cerebral cortex"
57                    },
58                    {
59                        "@id": "/sample-terms/NTR_0000750/",
60                        "status": "released",
61                        "term_name": "left hippocampal formation"
62                    },
63                    {
64                        "@id": "/sample-terms/UBERON_0000007/",
65                        "status": "released",
66                        "term_name": "pituitary gland"
67                    },
68                    {
69                        "@id": "/sample-terms/UBERON_0000948/",
70                        "status": "released",
71                        "term_name": "heart"
72                    },
73                    {
74                        "@id": "/sample-terms/UBERON_0001388/",
75                        "status": "released",
76                        "term_name": "gastrocnemius"
77                    },
78                    {
79                        "@id": "/sample-terms/UBERON_0001898/",
80                        "status": "released",
81                        "term_name": "hypothalamus"
82                    },
83                    {
84                        "@id": "/sample-terms/UBERON_0002369/",
85                        "status": "released",
86                        "term_name": "adrenal gland"
87                    }
88                ],
89                "status": "released",
90                "summary": "multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) heart tissue; Mus musculus NZO/H1LtJ (female, 69 days) left cerebral cortex tissue; ... and 12 more samples",
91                "taxa": "Mus musculus",
92                "treatments": []
93            }
94        ],
95        "status": "released",
96        "summary": "Parse SPLiT-seq"
97    },
98    "file_size": 3709661733,
99    "flowcell_id": "AAC3VTCHV",
100    "gene_list_for": [],
101    "href": "/sequence-files/IGVFFI9042OJDL/@@download/IGVFFI9042OJDL.fastq.gz",
102    "illumina_read_type": "R2",
103    "input_file_for": [
104        "/matrix-files/IGVFFI6393DIUV/"
105    ],
106    "integrated_in": [],
107    "lab": {
108        "@id": "/labs/ali-mortazavi/",
109        "title": "Ali Mortazavi, UCI"
110    },
111    "lane": 2,
112    "loci_list_for": [],
113    "maximum_read_length": 86,
114    "md5sum": "9b4dd38e33b57cd3bd4e7f3a1a036d79",
115    "mean_read_length": 86,
116    "minimum_read_length": 86,
117    "quality_metrics": [],
118    "read_count": 68491902,
119    "read_names": [
120        "Read 2"
121    ],
122    "release_timestamp": "2025-04-19T04:38:45.880012+00:00",
123    "s3_uri": "s3://igvf-files/2023/10/18/a9f00aa7-94ae-4d64-8f4d-39785da88cd9/IGVFFI9042OJDL.fastq.gz",
124    "schema_version": "15",
125    "seqspecs": [
126        "/configuration-files/IGVFFI9664NWJZ/"
127    ],
128    "sequencing_kit": "NextSeq 1000/2000 P3 Reagent Kit",
129    "sequencing_platform": {
130        "@id": "/platform-terms/EFO_0010963/",
131        "status": "released",
132        "term_name": "Illumina NextSeq 2000"
133    },
134    "sequencing_run": 2,
135    "status": "released",
136    "submitted_by": {
137        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
138        "title": "Diane Trout"
139    },
140    "submitted_file_name": "igvf_012/nextseq/igvf_012_B01_D_next_N1_L002_R2.fastq.gz",
141    "summary": "R2 reads from sequencing run 2",
142    "upload_status": "validated",
143    "uuid": "a9f00aa7-94ae-4d64-8f4d-39785da88cd9"
144}