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INDEXED
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SequenceFile
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IGVFFI9022RJXF
IGVFFI9022RJXF
preview
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS7706LHLI
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X032_G7_P034_L002_I1
md5sum
78e7333df880bf67ba690c87bc5fc3f2
Content MD5sum
93dc07d613bff92f35e6df55209106bb
File Size
1.1 GB
Submitted File Name
Multiome_RNA_X032_G7_L007_P034_S15_L002_I1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
H2WFTDSX7
Lane
2
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
I1
Average Read Length
10
Read Count
161875794
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM2646IJIB
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 70 years) substantia nigra tissue associated with cerebral amyloid angiopathy; ... and 10 more samples