IGVFFI9008GTBA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9087SPJI(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP027_G6_P075_L005_R2

md5sum

c0cca6f4c7eec06b33cd9d23a8704726

Content MD5sum

56513640c6fcf47ab87fd0c3b2c8a654

File Size

3.2 GB

Submitted File Name

Multiome_ATAC_RP027_G6_L006_P075_S30_L005_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

183839825

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7247VDCH

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 6 more samples