IGVFFI9000IJYO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0599HJZM(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X056_G5_P073_L002_R1

md5sum

d64820d38a1244e2acdb005395068998

Content MD5sum

8acb20ed3ec2e6f111beb7d3816a3462

File Size

12 GB

Submitted File Name

Multiome_ATAC_X056_G5_L005_P073_S13_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

174396883

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2277IYGW

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 8 more samples