IGVFFI8996PQJD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6760HDFY(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X035_G5_P035_L003_R3

md5sum

1a14de7671bd65986fe02c1f5268ac30

Content MD5sum

48d911deba646c9f4835052c56b77afa

File Size

10 GB

Submitted File Name

Multiome_ATAC_X035_G5_L005_P035_S37_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

191835180

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2818XKIR

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 89 years) substantia nigra tissue; Homo sapiens (female, 84 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples