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IGVFFI8994UMQU

released
validated
File Set
IGVFDS1560LMQZ(scATAC-seq)
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jay-shendure:scATAC_mEBs_rep1_day21_10XlaneA_I1
md5sum
a6ec4ac9ed27a85a8873d50f5c93eb20
Content MD5sum
a3c4645bb6d774585d3c291ee0caec95
File Size
747 MB
Submitted File Name
/net/shendure/vol8/projects/JBL/GEO_scATAC_EB_correction_nobackup/scATAC_mEBs/scATAC_mEBs_d21_crispri_rep1_lane_a_I1_001.fastq.gz

Sequencing Details

Sequencing Platform
Illumina NextSeq 500
Sequencing Run
1
Flowcell ID
H3JK7BGXG
Lane
1
Sequencing Kit
NextSeq 500/550 High-Output v2.5 Kit
Illumina Read Type
I1
Average Read Length
8
Read Count
101261224

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneA), male, Mus musculus WD44

Files Derived From This File

7 items
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
87 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
202 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
53 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
71 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
126 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
120 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
77 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI8994UMQU, IGVFFI3937KXBX, IGVFFI4010FPRN, IGVFFI4853BUVD
Jay Shendure, UW
856 B
validated

Attribution

Award
HG011966
Principal Investigator(s)
Contact P.I.
Jay Shendure
Lab
Jay Shendure, UW