IGVFFI8937OBDN

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1986QXQD(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X047_G1_P047_L003_R3

md5sum

92ecdded59af06dcb8cc947108faff63

Content MD5sum

ced43d80cc720c2b36b031f0a50e984e

File Size

8.5 GB

Submitted File Name

Multiome_ATAC_X047_G1_L001_P047_S21_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

270491848

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6392OCPY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples