IGVFFI8918KVII

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4670XLUZ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X047_G6_P049_L001_R1

md5sum

7d3d4a2704c40eb14f328dc32defe6a8

Content MD5sum

83403f9ad4cf42e7870be113d59c416c

File Size

5.3 GB

Submitted File Name

Multiome_ATAC_X047_G6_L006_P049_S2_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H7VW3DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

161323743

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5457GRUY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples