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IGVFFI8905WBYU

released
validated
File Set
IGVFDS2534CJYA(single-cell RNA sequencing assay (SHARE-seq))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
buenrostro-bernstein:surya-HuIBD01-1-orgs-more-RNA.R2.fastq.gz
md5sum
e1969d8435c7e1b059ab3e5df6944032
Content MD5sum
9d38759d68910afbb9f0084f4d6fcbd7
File Size
11 GB
Submitted File Name
gs://sw-igvf-submission/surya-mouse-colitis/submit-fqs/HuIBD01-1-orgs-more-RNA.R2.fastq.gz
Checkfiles Version
v17
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
50
Read Count
301798851

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens colon epithelial cell organoid induced to colon for 7 days

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
64 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI9831SEGU, IGVFFI8905WBYU, IGVFFI2440LTBO
Jason Buenrostro, Broad
1.2 KB
validated